如何在Genbank上查找某一生物表达特定蛋白的一段基因序列
答案:3 悬赏:50
解决时间 2021-02-22 01:08
- 提问者网友:谁的错
- 2021-02-21 03:34
如何在Genbank上查找某一生物表达特定蛋白的一段基因序列
最佳答案
- 二级知识专家网友:等灯
- 2021-02-21 04:29
直接在NCBI主页输入你要找的基因的名字,比如S1PR1,然后搜索,找到下面的内容:
Genes
90Gene: collected information about gene loci
1HomoloGene: homologous gene sets for selected organisms
12UniGene: clusters of expressed transcripts
点90进去,里面是NCBI上这个基因在不同物种中的所有序列,找到是链霉菌这个物种就ok,我如果找人的话,就应该是:
S1PR1 – sphingosine-1-phosphate receptor 1 [Homo sapiens (human)]
Genes
90Gene: collected information about gene loci
1HomoloGene: homologous gene sets for selected organisms
12UniGene: clusters of expressed transcripts
点90进去,里面是NCBI上这个基因在不同物种中的所有序列,找到是链霉菌这个物种就ok,我如果找人的话,就应该是:
S1PR1 – sphingosine-1-phosphate receptor 1 [Homo sapiens (human)]
全部回答
- 1楼网友:人间朝暮
- 2021-02-21 06:00
到NCBI的genome数据库,找到链霉菌基因组,点开可以看到链霉菌全基因组和注释信息,在里面ctrl+F找脂肪酶。
- 2楼网友:神的生死簿
- 2021-02-21 05:11
直接在NCBI主页输入你要找的基因的名字,比如S1PR1,然后搜索,找到下面的内容:
Genes
90Gene: collected information about gene loci
1HomoloGene: homologous gene sets for selected organisms
12UniGene: clusters of expressed transcripts
点90进去,里面是NCBI上这个基因在不同物种中的所有序列,找到是链霉菌这个物种就ok,我如果找人的话,就应该是:
S1PR1 – sphingosine-1-phosphate receptor 1 [Homo sapiens (human)]
然后再点进去
Genomic
NG_016181.1 RefSeqGene
Range
5001..9772
Download
GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
NM_001400.4 → NP_001391.2sphingosine 1-phosphate receptor 1
See proteins identical to NP_001391.2
Status: REVIEWED
pfam00001
Location:68 – 311
Blast Score: 367
7tm_1; 7 transmembrane receptor (rhodopsin family)
Source sequence(s)
BC018650, CR977007, DB132417, DB572979
Consensus CDS
CCDS777.1
UniProtKB/Swiss-Prot
P21453
Related
ENSP00000305416, OTTHUMP00000012525, ENST00000305352, OTTHUMT00000029908
Conserved Domains (1) summary
GenBank和FASTA可以查看它在基因组上的序列
NM_001400.4 和 NP_001391.2分别是其mRNA序列和蛋白质序列
祝好!
Genes
90Gene: collected information about gene loci
1HomoloGene: homologous gene sets for selected organisms
12UniGene: clusters of expressed transcripts
点90进去,里面是NCBI上这个基因在不同物种中的所有序列,找到是链霉菌这个物种就ok,我如果找人的话,就应该是:
S1PR1 – sphingosine-1-phosphate receptor 1 [Homo sapiens (human)]
然后再点进去
Genomic
NG_016181.1 RefSeqGene
Range
5001..9772
Download
GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
NM_001400.4 → NP_001391.2sphingosine 1-phosphate receptor 1
See proteins identical to NP_001391.2
Status: REVIEWED
pfam00001
Location:68 – 311
Blast Score: 367
7tm_1; 7 transmembrane receptor (rhodopsin family)
Source sequence(s)
BC018650, CR977007, DB132417, DB572979
Consensus CDS
CCDS777.1
UniProtKB/Swiss-Prot
P21453
Related
ENSP00000305416, OTTHUMP00000012525, ENST00000305352, OTTHUMT00000029908
Conserved Domains (1) summary
GenBank和FASTA可以查看它在基因组上的序列
NM_001400.4 和 NP_001391.2分别是其mRNA序列和蛋白质序列
祝好!
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